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...ttccagccttaacacaactggttgatggggcttgatgattcgtgtggttgaacctgatcattattatgcaccagttcatatgtgtgcgtgtgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG
species | Oryza sativa |
transcript | LOC_Os12g15470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAACGGCGGCCCCTGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|29668081|gb|CB664356.1|CB664356
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCCGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|33801783|gb|CF326764.1|CF326764
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCEST: gi|4715276|gb|AU056393.1|AU056393
genomic: CAACGGCGGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
EST: GGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACG GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
genomic: GGCCCCGGCTGCTCCAGCTTCGACGGCTTCGTCTACGAGCACGgtgcgtatat ... tgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTC
ggttgaacctgatcattattatgcaccagttcatatgtgtgcgtgtgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG
acctgat putative branch site (score: 22)
tgctttcc putative PPT
atcattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccagccttaacacaactggttgatggggcttgatgattcgtgtggttgaacctgatcattattatgcaccagttcatatgtgtgcgtgtgctttccagGACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG
- ccagcct
- - - - - -acacaac
- - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - -gaacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcgtg