1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taggaccgagcgagtagttgtcaattagtctatcatatgttgttaattaggatctaataaatcttaatttgtactaattttggagtattgaatttcgcagTGTTCACCATGTTCGTTGCCATCGCGGTCCCTTTCTTTGGTGGACTGCTAGGCTTCTTTGGTGGCTTTGCGTTTGCTCCAACGACCTACTTC
species | Oryza sativa |
transcript | LOC_Os12g14100.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCAAACCCGGCATGCCTCTCCGCCTCATCGCCCGATCACTCTACGTCT TGTTCACCATGTTCGTTGCCATCTCGGTCCCTTTCTTTGGTGGACTGCTAGEST: gi|88259822|gb|CI364313.1|CI364313
genomic: CTTCAAACCCGGCATGCCTCTCCGCCTCATCGCCCGATCACTCTACGTCTgtaagtgtgc ... aatttcgcagTGTTCACCATGTTCGTTGCCATCGCGGTCCCTTTCTTTGGTGGACTGCTAG
EST: CTTCAAACCCGGCATGCCTCTCCGCCTCATCGCCCGATCACTCTACGTCT TGTTCACCATGTTCGTTGCCATCGCGGTCCCTTTCTTTGGTGGACTGCTAGEST: gi|86864894|gb|CI343939.1|CI343939
genomic: CTTCAAACCCGGCATGCCTCTCCGCCTCATCGCCCGATCACTCTACGTCTgtaagtgtgc ... aatttcgcagTGTTCACCATGTTCGTTGCCATCGCGGTCCCTTTCTTTGGTGGACTGCTAG
EST: CCCGGCATGCCTCTCCCCCTCATCGCCCGATCACTCTACGTCT TGTTCACCATGTTCGTTGCCATCGCGGTCCCTTTCTTTGGTGGACTGCTAG
genomic: CCCGGCATGCCTCTCCGCCTCATCGCCCGATCACTCTACGTCTgtaagtgtgc ... aatttcgcagTGTTCACCATGTTCGTTGCCATCGCGGTCCCTTTCTTTGGTGGACTGCTAG
attaggatctaataaatcttaatttgtactaattttggagtattgaatttcgcagTGTTCACCATGTTCGTTGCCATCGCGGTCCCTTTCTTTGGTGGACTGCTAGGCTTCTTTGGTGGCTTTGCGTTTGCTCCAACGACCTACTTC
tactaat putative branch site (score: 3)
atctaataaatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggaccgagcgagtagttgtcaattagtctatcatatgttgttaattaggatctaataaatcttaatttgtactaattttggagtattgaatttcgcagTGTTCACCATGTTCGTTGCCATCGCGGTCCCTTTCTTTGGTGGACTGCTAGGCTTCTTTGGTGGCTTTGCGTTTGCTCCAACGACCTACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - atgttgt