1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acgatgggcttatattcaggaatgcatgggcttactgcctatgttggattctttgagatgtccaagcctaagaaaggtgagtatgtcttcgtctcttcagCATGTGGTGCCATAGGTCAAATTGTTGGGCAGCTTGCTAAGATCAAAGGTTGCTATGTGGTTGGCAGTGCTGGTTCTGATGACAAG
species | Oryza sativa |
transcript | LOC_Os12g12514.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ggattctttgagatgtccaagcctaagaaaggtgagtatgtcttcgtctcttcagCATGTGGTGCCATAGGTCAAATTGTTGGGCAGCTTGCTAAGATCAAAGGTTGCTATGTGGTTGGCAGTGCTGGTTCTGATGACAAG
tgtcttcgtctcttc CT-rich tract
taagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgatgggcttatattcaggaatgcatgggcttactgcctatgttggattctttgagatgtccaagcctaagaaaggtgagtatgtcttcgtctcttcagCATGTGGTGCCATAGGTCAAATTGTTGGGCAGCTTGCTAAGATCAAAGGTTGCTATGTGGTTGGCAGTGCTGGTTCTGATGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - tgcatgg
- - - - - - - - - - - - - - - - tactgcc
- - - - - - - - - - - - - - - - - - - -tatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaag