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...aaatatactattggtgtgatcacattcaatgcctggttttatttagaggaaacacaggttatttttctgtgagaactgaaccctctgattcttacaacagGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAA
species | Oryza sativa |
transcript | LOC_Os12g10784.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAG GCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAGEST: gi|33681873|gb|CF310112.1|CF310112
genomic: CGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAGgtgccaatcc ... cttacaacagGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAG
EST: CGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAG GCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAGEST: gi|88433551|gb|CI594365.1|CI594365
genomic: CGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAGgtgccaatcc ... cttacaacagGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAG
EST: CGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAG GCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAGEST: gi|58589242|gb|CF987550.1|CF987550
genomic: CGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAGgtgccaatcc ... cttacaacagGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAG
EST: CGGCGGATGCAATGGACGCTTCGTCGGTGGCGCTGTACGGCCAGCTCAAG GCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATCGAATCAGAGEST: gi|41883464|gb|BX928437.1|BX928437
genomic: CGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAGgtgccaatcc ... cttacaacagGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAG
EST: GGAGGCAATGGACGC-TCGTCGGTGGCGCTCTACGGCCAGCTCAAG GCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATCGAATCAGAGEST: gi|88332901|gb|CI639749.1|CI639749
genomic: GGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAGgtgccaatcc ... cttacaacagGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAG
EST: CGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAG GCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAG
genomic: CGTCGGAGGCAATGGACGCTTCGTCGGTGGCGCTCTACGGCCAGCTCAAGgtgccaatcc ... cttacaacagGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAG
gaggaaacacaggttatttttctgtgagaactgaaccctctgattcttacaacagGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAA
ttcttac putative branch site (score: 2)
ttcttac CT-rich tract
ttatttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatactattggtgtgatcacattcaatgcctggttttatttagaggaaacacaggttatttttctgtgagaactgaaccctctgattcttacaacagGCTGCTCAACCATTCTTCTTGTTAGCTGGGCCTAATGTGATTGAATCAGAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG