1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtaaaggactgataggacaattttgctgttcattgttacatggtgcttctgctttatcgcggctcaccattcacctctagttttcttttggttcatgtagGGTCTCAAATATTGGTAAGCCTTGTCTTGAAAATGGAAGCACCAGCTTCTTCTTCCTTCTCTATGGTGGCTGAGGAG
species | Oryza sativa |
transcript | LOC_Os12g08280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTGTTCAGTCTAAGGCGGATCAAAGTCCGGTGACAGTTGCTGATTATG GGTCTCAAATATTGGTAAGCCTTGTCTTGAAAATGGAAGCACCAGCTTCTTEST: gi|58693600|gb|CK082287.1|CK082287
genomic: TGGTGTTCAGTCTAAGGCGGATCAAAGTCCGGTGACAGTTGCCGATTATGgtacgatctg ... gttcatgtagGGTCTCAAATATTGGTAAGCCTTGTCTTGAAAATGGAAGCACCAGCTTCTT
EST: GTCCGGTGACAGTTGCCGATTATG GGTCTCAAATATTGGTAAGCCTTGTCTTGAAAATGGAAGCACCAGCTTCTT
genomic: GTCCGGTGACAGTTGCCGATTATGgtacgatctg ... gttcatgtagGGTCTCAAATATTGGTAAGCCTTGTCTTGAAAATGGAAGCACCAGCTTCTT
cttctgctttatcgcggctcaccattcacctctagttttcttttggttcatgtagGGTCTCAAATATTGGTAAGCCTTGTCTTGAAAATGGAAGCACCAGCTTCTTCTTCCTTCTCTATGGTGGCTGAGGAG
ggctcac putative branch site (score: 15)
ttttcttttggttc putative PPT
ttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaggactgataggacaattttgctgttcattgttacatggtgcttctgctttatcgcggctcaccattcacctctagttttcttttggttcatgtagGGTCTCAAATATTGGTAAGCCTTGTCTTGAAAATGGAAGCACCAGCTTCTTCTTCCTTCTCTATGGTGGCTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - -ttacatg
- - - - - - - - - - - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattca