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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaacatttcttcagatcagattcttgattcttcagagatatttgtcaacatagcaaaaatctgaacctgtgtgatacgtgatgcacagCTGTGTGACTTCGGCCTCGCGCTCTGGGCGGCGGAGGCGGCGTCTCCGGTCACCGGCGACGATGTCGCCGGCAAATTCGG

Basic information

species Oryza sativa
transcript LOC_Os12g08050.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g08050.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G418432_T01 (Zea mays), 3'ss of exon 5
-----------------------------------------gtaaaaacatt-----tcttcagatc-------agattcttgattcttcagagatatttgtcaacatagcaaaaat--------ctgaacc-------------tgtgtgat-acgtgatg-cacagCTGTGTGACTTCGGCCTCGCGCTCTGGGCGGCGGAGGCGGCGTCTCCGGTCACCGGCGACGATGTCGCCGGCAAATTCGG
                                             | || ||     ||||||| ||        ||    ||| |    ||   ||||||| ||  | ||     |        |||| ||             ||| || |     ||||   |||||||||||||||||||||||| | |||||||  || |||||  | | ||||||||||||||| ||||| || | ||||||
gtgaggagaggaacccgcgtgcatatccggcgtttcggcagacgcacacgttcttcttcttcaggtcctgtgacggacgactgaatgaagaggtgtatttgttaatttggcgcgcgtggcttgagctgagccccctcttctgttctgtttgctcgtacgatgatgcagCTGTGTGACTTCGGCCTCGCGATATGGGCGGACGACGCGGCAGCGCAGGTCACCGGCGACGACGTCGCGGGAACATTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagatatttgtcaacatagcaaaaatctgaacctgtgtgatacgtgatgcacagCTGTGTGACTTCGGCCTCGCGCTCTGGGCGGCGGAGGCGGCGTCTCCGGTCACCGGCGACGATGTCGCCGGCAAATTCGG
                     aaaaatct  TA-rich tract