1 5' 3' | 2 5' 3' | 3 5' 3' |
gttggccatctcttgctcttccttattgcctttgcatatcgtaatactaatactcagttccttagtaaccaaaaccttttcatcttttttcagctcttgtattactcagttccttagtaaccaaaacctttcaccttttttcagCTCTTGGTGGAGTGGACTAAAGGAAAGAATCTCATCATATCAAGTGCTGCTCACACTGCTTCTGAAATTAGAGGACCCTATGATGCCATAAACTTATCTT
species | Oryza sativa |
transcript | LOC_Os12g07680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACAGGCCATAGCCGAAGCCAAG CTCTTGGTGGAGTGGACTAAAGGAAAGAATCTCATCATATCAAGTGCTGCTEST: gi|29688263|gb|CB684538.1|CB684538
genomic: GACAGGCCATAGCCGAAGCCAAGgttggccatc ... cttttttcagCTCTTGGTGGAGTGGACTAAAGGAAAGAATCTCATCATATCAAGTGCTGCT
EST: CCCTCATCGCTGATGCCGCTTCAAGGAGACAGGCCATAGCCGAAGCCAAG CTCTTGGTGGAGTGGACTAAAGGAAAGAATCTCATCATATCAAGTGCTGCT
genomic: CCCTCATCGCTGATGCCGCTTCAAGGAGACAGGCCATAGCCGAAGCCAAGgttggccatc ... cttttttcagCTCTTGGTGGAGTGGACTAAAGGAAAGAATCTCATCATATCAAGTGCTGCT
tcagctcttgtattactcagttccttagtaaccaaaacctttcaccttttttcagCTCTTGGTGGAGTGGACTAAAGGAAAGAATCTCATCATATCAAGTGCTGCTCACACTGCTTCTGAAATTAGAGGACCCTATGATGCCATAAACTTATCTT
tagtaac putative branch site (score: 3)
cctttcaccttttttc putative PPT
ttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggccatctcttgctcttccttattgcctttgcatatcgtaatactaatactcagttccttagtaaccaaaaccttttcatcttttttcagctcttgtattactcagttccttagtaaccaaaacctttcaccttttttcagCTCTTGGTGGAGTGGACTAAAGGAAAGAATCTCATCATATCAAGTGCTGCTCACACTGCTTCTGAAATTAGAGGACCCTATGATGCCATAAACTTATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA