1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtctgtaccttttataatggtttagtgtgaaatgtagtttctagtgtttattgtctgctgataagcctgataactgcaccagGATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCATTCGACCCAGAGGCCAAGGAGGGACATGACCTGATCATTGGTATGGGGT
species | Oryza sativa |
transcript | LOC_Os12g07450.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAACACCGCTGATACATTATTCATCAGTGACCTCAATTCTCAAGACAAG GATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCAEST: gi|33687920|gb|CF316159.1|CF316159
genomic: TCAACACCGCTGATACACTATTCATCAGTGACCTCAATTCTCAAGACAAGgtctgtacct ... actgcaccagGATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCA
EST: TCAACACCGCTGATACACTATTCATCAGTGACCTCAATTCTCAAGACAAG GATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCAEST: gi|66927819|gb|CX114667.1|CX114667
genomic: TCAACACCGCTGATACACTATTCATCAGTGACCTCAATTCTCAAGACAAGgtctgtacct ... actgcaccagGATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCA
EST: TCAACACCGCTGATACATTATTCATCAGTGACCTCAATTCTCAAGACAAG GATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCA
genomic: TCAACACCGCTGATACACTATTCATCAGTGACCTCAATTCTCAAGACAAGgtctgtacct ... actgcaccagGATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCA
tgaaatgtagtttctagtgtttattgtctgctgataagcctgataactgcaccagGATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCATTCGACCCAGAGGCCAAGGAGGGACATGACCTGATCATTGGTATGGGGT
tgataac putative branch site (score: 2)
tgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtaccttttataatggtttagtgtgaaatgtagtttctagtgtttattgtctgctgataagcctgataactgcaccagGATCCAATAAAGTCCATCCATTTCAGCAACTCGAACCCACTATGCCATGCATTCGACCCAGAGGCCAAGGAGGGACATGACCTGATCATTGGTATGGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG