1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgccatttgttgcttttgaatctgttgcgcatcttaatcaactaattataaatctatgatagccatatgcactaatcaggttaaacttggatcctcacagGAGATAAAAAGTTGCTGACTCCGCAACCTCGGCTAAGGACAGGATTTTTCTCAGTTCTGGAATCTCACATGATACCCATTGGATGTATTCCAGAAGCATG
species | Oryza sativa |
transcript | LOC_Os12g07020.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTCAATCCCGACTCACCTCAGAAGCAAGTTCGCTTCTTAACACTCTCAG GAGATAAAAAGTTGCTGACTCCGCAACCTCGGCTAAGGACAGGATTTTTCTEST: gi|29658507|gb|CB654782.1|CB654782
genomic: GGTCAATCCCGACTCACCTCAGAAGCAAGTTCGCTTCTTAACACTCTCAGgtcagtttgc ... atcctcacagGAGATAAAAAGTTGCTGACTCCGCAACCTCGGCTAAGGACAGGATTTTTCT
EST: GGTCAATCCCGACTCACCTCAGAAGCAAGTTCGCTTCTTAACACTCTCAG GAGATAAAAAGTTGCTGACTCCGCAACCTCGGCTAAGGACAGGATTTTTCT
genomic: GGTCAATCCCGACTCACCTCAGAAGCAAGTTCGCTTCTTAACACTCTCAGgtcagtttgc ... atcctcacagGAGATAAAAAGTTGCTGACTCCGCAACCTCGGCTAAGGACAGGATTTTTCT
ttataaatctatgatagccatatgcactaatcaggttaaacttggatcctcacagGAGATAAAAAGTTGCTGACTCCGCAACCTCGGCTAAGGACAGGATTTTTCTCAGTTCTGGAATCTCACATGATACCCATTGGATGTATTCCAGAAGCATG
cactaat putative branch site (score: 37)
tcctcac putative PPT
ttaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccatttgttgcttttgaatctgttgcgcatcttaatcaactaattataaatctatgatagccatatgcactaatcaggttaaacttggatcctcacagGAGATAAAAAGTTGCTGACTCCGCAACCTCGGCTAAGGACAGGATTTTTCTCAGTTCTGGAATCTCACATGATACCCATTGGATGTATTCCAGAAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
tgccatt
- - - -tgttgct
- - - - - - - - - - -ctgttgc
- - - - - - - - - - - - - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcac