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gtcagttccacttccagaactagctatcctcagaatcgcggatgcatccagttgattcaaaagaattcattttcagtgcaaatgtctcatcatgcattccattgtgtctatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTACGAGTGATTATCTTTTTACCGGGAGTCGGGATGGTACCTTGAAGAGGT
species | Oryza sativa |
transcript | LOC_Os12g06810.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88423157|gb|CI613458.1|CI613458
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88398573|gb|CI598538.1|CI598538
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88299650|gb|CI574763.1|CI574763
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAGGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88731171|gb|CI754784.1|CI754784
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88392717|gb|CI623948.1|CI623948
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88333238|gb|CI641081.1|CI641081
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88427243|gb|CI586791.1|CI586791
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAAGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88720333|gb|CI743632.1|CI743632
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88299299|gb|CI572251.1|CI572251
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88385685|gb|CI566547.1|CI566547
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88575849|gb|CI669994.1|CI669994
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|58659315|gb|CK047995.1|CK047995
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: AAAGGAGAAGCGCTTTACATATGTGCTGAATGAGGGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88357189|gb|CI616076.1|CI616076
genomic: AAAGGAGAAGCGCTTTACATATGTGCTGAATGACG-CTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88360459|gb|CI608461.1|CI608461
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88350674|gb|CI617529.1|CI617529
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATAACTAAATGCCTCTACTTCTGGTEST: gi|88730866|gb|CI754479.1|CI754479
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATGGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88352046|gb|CI626046.1|CI626046
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88372748|gb|CI612676.1|CI612676
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88725276|gb|CI748535.1|CI748535
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88392951|gb|CI614833.1|CI614833
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88351371|gb|CI627387.1|CI627387
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGGAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88581848|gb|CI699062.1|CI699062
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGGTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88411008|gb|CI606227.1|CI606227
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: AAAGGAGAAGCGCTTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88315130|gb|CI611794.1|CI611794
genomic: AAAGGAGAAGCGC-TTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88356655|gb|CI617738.1|CI617738
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88405503|gb|CI588709.1|CI588709
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|117217320|gb|CT852008.1|CT852008
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88311817|gb|CI577423.1|CI577423
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|29666968|gb|CB663243.1|CB663243
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88729484|gb|CI752994.1|CI752994
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88351353|gb|CI627369.1|CI627369
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88431514|gb|CI579631.1|CI579631
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|29678629|gb|CB674904.1|CB674904
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTEST: gi|88299553|gb|CI574666.1|CI574666
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
EST: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAG CATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
genomic: GAAAGGAGAAGCGCTTTACATATGTGCTGAATGACGCTGATAACAAAAAGgtcagttcca ... tatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGT
aattcattttcagtgcaaatgtctcatcatgcattccattgtgtctatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTACGAGTGATTATCTTTTTACCGGGAGTCGGGATGGTACCTTGAAGAGGT
tctatttttc CT-rich tract
tctattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttccacttccagaactagctatcctcagaatcgcggatgcatccagttgattcaaaagaattcattttcagtgcaaatgtctcatcatgcattccattgtgtctatttttcagCATTGTGCTGGGATCAACTGCTTGTCATACCTAAATGCCTCTACTTCTGGTACGAGTGATTATCTTTTTACCGGGAGTCGGGATGGTACCTTGAAGAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG