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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttatttagtagtatatgttatactgcatttgcttatgtcatggctcaaaatttctgtttccatcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGACATTGGAACGCTTCATGATAACTTTGT

Basic information

species Oryza sativa
transcript LOC_Os12g04990.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88307649|gb|CI644685.1|CI644685
EST:     AGTGCTGTACTCCCTGAGAAGTGGCAAACTGGAAAGTGGAATGTGTACAG                         ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: gi|33675569|gb|CF303808.1|CF303808
EST:     AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG                         ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: gi|88294822|gb|CI604694.1|CI604694
EST:     AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG                         ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: gi|87009029|gb|CI304972.1|CI304972
EST:     AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG                         ATCCGCAAAGTCACCTCTTAAGTTAATANATAGATTCCCTGATAACCCAGA
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: gi|88574980|gb|CI666749.1|CI666749
EST:     AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG                         ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: gi|88307728|gb|CI644768.1|CI644768
EST:     AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG                         ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatactgcatttgcttatgtcatggctcaaaatttctgtttccatcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGACATTGGAACGCTTCATGATAACTTTGT
                                   tttctgtttccatctt  CT-rich tract
                             tcaaaattt  TA-rich tract