Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88993008|gb|CI035970.1|CI035970EST: GCCATGGAATCTCGCATGCCTTATTGAAGGATTTGTCAACAGAAGTGAAG CCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCA
genomic: GCCATGGAATCTCGCATGCCTTATTGAAGGATTTGTCAACAGAAGTGAAGgttattgatt ... ttgtgtgcagCCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCA
EST:
gi|88482153|gb|CI419424.1|CI419424EST: ATCTCGCATGCCTTATTGAAGGATTTGTCAACAGAAGTGAAG CCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCA
genomic: ATCTCGCATGCCTTATTGAAGGATTTGTCAACAGAAGTGAAGgttattgatt ... ttgtgtgcagCCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCA
EST:
gi|88325141|gb|CI646561.1|CI646561EST: GCCATGGAATCTCGCATGCCTTATTGAAGGATTTGTCAACAGAAGTGAAG CCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGA
genomic: GCCATGGAATCTCGCATGCCTTATTGAAGGATTTGTCAACAGAAGTGAAGgttattgatt ... ttgtgtgcagCCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaagtttgcactactacgtaagaattcctatttactgaattatttgtgtgcagCCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGC
tatttactgaattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgccatctgcatcttttgcatcgaaatgaaatgaatgtttcccttttcaagtttgcactactacgtaagaattcctatttactgaattatttgtgtgcagCCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG