Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4716350|gb|AU057466.1|AU057466EST: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAG TTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
genomic: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAGgtacagatct ... tattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
EST:
gi|29672671|gb|CB668946.1|CB668946EST: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAG TTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
genomic: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAGgtacagatct ... tattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
EST:
gi|29675346|gb|CB671621.1|CB671621EST: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAG TTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
genomic: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAGgtacagatct ... tattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
EST:
gi|33683584|gb|CF311823.1|CF311823EST: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAG TTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
genomic: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAGgtacagatct ... tattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
EST:
gi|29667261|gb|CB663536.1|CB663536EST: GCTCAGTTTGAG TTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
genomic: GCTCAGTTTGAGgtacagatct ... tattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
EST:
gi|29642048|gb|CB647055.1|CB647055EST: ACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAG TTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
genomic: ACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAGgtacagatct ... tattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
EST:
gi|29642088|gb|CB647095.1|CB647095EST: GTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAG TTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
genomic: GTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAGgtacagatct ... tattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
EST:
gi|14574815|gb|AU197330.1|AU197330EST: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAG TTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
genomic: CCTAGTACAGGAACTACAGATTACTTGCTGCTTGACCTGCTCAGTTTGAGgtacagatct ... tattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagggctatggttaattgcaatttattgaaatttcaatatgtcaatattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATACGAACATTTATAAACCAGAGAAATTGAAGCTTGTTGTATGGGATTGGTC
ggttaat putative branch site (score: 4)
aatttattgaaatttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacagatctcgtgatttccctgtttactggtgttagttttaggaaccttgatgctttggtttagggctatggttaattgcaatttattgaaatttcaatatgtcaatattgtgcagTTGGTTTGCTTCCATTACAAGCAACTGTCCAAGAACATTTTATTTGTAATACGAACATTTATAAACCAGAGAAATTGAAGCTTGTTGTATGGGATTGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC