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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttcaggaacttgttagtttactttagtgacagtagaattttattactgaagtatgccctgaaactcgtatgatatgaccatgtgaacttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGG

Basic information

species Oryza sativa
transcript LOC_Os12g04020.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88431167|gb|CI574338.1|CI574338
EST:     TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAA                         TTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGC
genomic: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAAgtaagttcta ... ttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGC
EST: gi|88337458|gb|CI630755.1|CI630755
EST:     TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAA                         TTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCCAGTG
genomic: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAAgtaagttcta ... ttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGC-AGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactgaagtatgccctgaaactcgtatgatatgaccatgtgaacttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGG
                                          aacttac  putative branch site (score: 2)
                                            cttactttc  CT-rich tract
                         tatgatat  TA-rich tract