1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcttcaggaacttgttagtttactttagtgacagtagaattttattactgaagtatgccctgaaactcgtatgatatgaccatgtgaacttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGG
species | Oryza sativa |
transcript | LOC_Os12g04020.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAA TTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCEST: gi|88431167|gb|CI574338.1|CI574338
genomic: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAAgtaagttcta ... ttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGC
EST: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAA TTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCEST: gi|88737690|gb|CI761198.1|CI761198
genomic: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAAgtaagttcta ... ttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGC
EST: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAA TTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCEST: gi|88337458|gb|CI630755.1|CI630755
genomic: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAAgtaagttcta ... ttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGC
EST: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAA TTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCCAGTG
genomic: TTCTCTCCAAGTGCCTGCAGAGCAAGTGTTGATGACAGCAACACCAACAAgtaagttcta ... ttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGC-AGTG
ttactgaagtatgccctgaaactcgtatgatatgaccatgtgaacttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGG
aacttac putative branch site (score: 20)
cttactttc CT-rich tract
tatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttcaggaacttgttagtttactttagtgacagtagaattttattactgaagtatgccctgaaactcgtatgatatgaccatgtgaacttactttcagTTACAAGCATCGCAATGGTGGCAACAATCAGACGATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - tatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga