1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtttagtttccatgcattccatctaatttcatgaaaaatatattttttacaaaaggtactcgatccattctcttctctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG
species | Oryza sativa |
transcript | LOC_Os12g03860.5 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTEST: gi|33795182|gb|CF323464.1|CF323464
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG AGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTEST: gi|88571513|gb|CI662886.1|CI662886
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagA-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTEST: gi|88372054|gb|CI641689.1|CI641689
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTEST: gi|88694564|gb|CI738602.1|CI738602
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG ATAAGAGACTTGCATGTCGCTCGGACAGAGGAAGATATCGGATEST: gi|33692622|gb|CF320861.1|CF320861
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGAT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTEST: gi|33677540|gb|CF305779.1|CF305779
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTEST: gi|88342532|gb|CI637108.1|CI637108
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
atgaaaaatatattttttacaaaaggtactcgatccattctcttctctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG
tccattctcttctct CT-rich tract
aaatatattttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttagtttccatgcattccatctaatttcatgaaaaatatattttttacaaaaggtactcgatccattctcttctctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA