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gtaagtttagtttccatgcattccatctaatttcatgaaaaatatattttttacaaaaggtactcgatccattctcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG
species | Oryza sativa |
transcript | LOC_Os12g03860.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCAT- ----GATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTEST: gi|88571513|gb|CI662886.1|CI662886
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG A-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTEST: gi|87008889|gb|CI304832.1|CI304832
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG A-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTEST: gi|88342532|gb|CI637108.1|CI637108
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG A-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTEST: gi|33677540|gb|CF305779.1|CF305779
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCAT- ----GATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTEST: gi|88372054|gb|CI641689.1|CI641689
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG A-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTEST: gi|33795182|gb|CF323464.1|CF323464
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG AGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
atttcatgaaaaatatattttttacaaaaggtactcgatccattctcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG
atctaat putative branch site (score: 3)
tccattctcttctct putative PPT
atgaaaaatatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttagtttccatgcattccatctaatttcatgaaaaatatattttttacaaaaggtactcgatccattctcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA