1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgacattttcctttcttaacacttggcatataatacaatccacaccattcctttgaattatgagctcttacttgatgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG
species | Oryza sativa |
transcript | LOC_Os12g01430.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|218485998|gb|FG965622.1|FG965622
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|163918505|gb|EG711435.1|EG711435
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
cacaccattcctttgaattatgagctcttacttgatgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG
tgttttct CT-rich tract
tttgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacattttcctttcttaacacttggcatataatacaatccacaccattcctttgaattatgagctcttacttgatgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG