1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcgctttaaccttgcaactacaacatatttgcatgtatttgcaaaggctattctaggttggctgtttgatgaaattcttacatactccctttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG
species | Oryza sativa |
transcript | LOC_Os12g01430.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCATCEST: gi|33822729|gb|CF337172.1|CF337172
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCATCEST: gi|88728599|gb|CI752109.1|CI752109
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCEST: gi|88296130|gb|CI667520.1|CI667520
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCEST: gi|33686639|gb|CF314878.1|CF314878
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGANTAGCGTTGGGGCGTTCACEST: gi|163918505|gb|EG711435.1|EG711435
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGA-TAGCGTTGGGGCGTTCAC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCEST: gi|33798269|gb|CF324991.1|CF324991
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCATCEST: gi|88342605|gb|CI656127.1|CI656127
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCATCEST: gi|55440809|gb|CV733716.1|CV733716
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCATCEST: gi|88454180|gb|CI694474.1|CI694474
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCATCEST: gi|88722956|gb|CI746466.1|CI746466
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTEST: gi|88347469|gb|CI637409.1|CI637409
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGT
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCEST: gi|218490970|gb|FG950243.1|FG950243
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: GGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCACAGC-G GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCACEST: gi|163925538|gb|EG713379.1|EG713379
genomic: GGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTC-CAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCAC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCEST: gi|88302253|gb|CI668099.1|CI668099
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCEST: gi|88302497|gb|CI668343.1|CI668343
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCEST: gi|88294157|gb|CI667131.1|CI667131
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCEST: gi|218498120|gb|FG965520.1|FG965520
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGCTGGGGCGTTCACCEST: gi|88301855|gb|CI667701.1|CI667701
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
EST: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAG GATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
genomic: AGGAATCAGAAGCTCAAGGACCTCAGAGAGCAGCTCAAGTCCTCCAGCAGgtagctgcct ... tttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACC
aggctattctaggttggctgtttgatgaaattcttacatactccctttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG
ttcttac putative branch site (score: 2)
tactcccttt CT-rich tract
aaattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgctttaaccttgcaactacaacatatttgcatgtatttgcaaaggctattctaggttggctgtttgatgaaattcttacatactccctttatgtcagGATATTCCTTGCTGGAAAGAAGGTCATGCAGATAGCGTTGGGGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC