1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gttcgatcctcacacacacacacacataaacacatcaatccaattattcaattaataatcaattgtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGGCAATCCCTCGCAAATGGCTCCAACTATTGTGGCCGCATCCTCAACTAC
species | Oryza sativa |
transcript | LOC_Os12g01140.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCAACATGACCGGCTACACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCEST: gi|29622370|gb|CB627381.1|CB627381
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTC
EST: TTCTTCAACATGACCGGCTACACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGEST: gi|29644411|gb|CB649418.1|CB649418
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
EST: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGEST: gi|29624447|gb|CB629458.1|CB629458
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
EST: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGEST: gi|29681858|gb|CB678133.1|CB678133
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAG
EST: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGEST: gi|29668387|gb|CB664662.1|CB664662
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
EST: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGEST: gi|29662103|gb|CB658378.1|CB658378
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
EST: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGEST: gi|29668422|gb|CB664697.1|CB664697
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
EST: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGEST: gi|29624476|gb|CB629487.1|CB629487
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
EST: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGEST: gi|29621737|gb|CB626748.1|CB626748
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
EST: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGEST: gi|29623832|gb|CB628843.1|CB628843
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
EST: TTCTTCAACATGACCGGCTACACCTCCAAGGAGGTTGTCGGCAGGAACTG CCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
genomic: TTCTTCAACATGACCGGCTATACCTCCAAGGAGGTTGTCGGCAGGAACTGgttcgatcct ... gtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAG
acacacataaacacatcaatccaattattcaattaataatcaattgtgtgtgcagCCGCTTCCTTCAAGGCTCTGGCACCGACCCCCATGAGATTGACAAGATCAGGCAATCCCTCGCAAATGGCTCCAACTATTGTGGCCGCATCCTCAACTAC
aattaat putative branch site (score: 11)
aatccaattattcaat TA-rich tract