1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctttccagacatttagagcactcattaacctttttcacaatttaattattgtctcattctcactaaattgctctacaatttgctgcttactttactcagGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACAGGAGTGGAAGATCCAAG
species | Oryza sativa |
transcript | LOC_Os12g01010.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTCTACATCTCCAACCTCGACTACGCCGTCTCCAACGAGGACATCAAG GAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACEST: gi|88325907|gb|CI649757.1|CI649757
genomic: AGCTCTACATCTCCAACCTCGACTACGCCGTCTCCAACGAGGACATCAAGgtaccaccac ... ctttactcagGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGAC
EST: AGCTCTACATCTCCAACCTCGACTACGCCGTCTCCAACGAGGACATCAAG GAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTEST: gi|88350221|gb|CI623159.1|CI623159
genomic: AGCTCTACATCTCCAACCTCGACTACGCCGTCTCCAACGAGGACATCAAGgtaccaccac ... ctttactcagGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGT
EST: AGCTCTAAATCTCCAACCTCGACTACGCCGTCTCCAACGAGGACATCAAG GAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACEST: gi|88332996|gb|CI639844.1|CI639844
genomic: AGCTCTACATCTCCAACCTCGACTACGCCGTCTCCAACGAGGACATCAAGgtaccaccac ... ctttactcagGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGAC
EST: AGCTCTACATCTCCAACCTCGACTACGCCGTCTCCAACGAGGACATCAAG GAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACT
genomic: AGCTCTACATCTCCAACCTCGACTACGCCGTCTCCAACGAGGACATCAAGgtaccaccac ... ctttactcagGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACT
attattgtctcattctcactaaattgctctacaatttgctgcttactttactcagGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACAGGAGTGGAAGATCCAAG
tgcttac putative branch site (score: 19)
cttacttt CT-rich tract
actaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttccagacatttagagcactcattaacctttttcacaatttaattattgtctcattctcactaaattgctctacaatttgctgcttactttactcagGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACAGGAGTGGAAGATCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgct