1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctaaaaatgctctgatttttattggacagcttacttctttttaaattgagctaacacaggttggaaatcattgacattttgatttcttttctttttccagTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTT
species | Oryza sativa |
transcript | LOC_Os11g41140.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAGCAGCTCATCAATGCG TACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAEST: gi|218485315|gb|FG946188.1|FG946188
genomic: TCAGCAGCTCATCAATGCGgtatgtcttg ... ctttttccagTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATA
EST: CCTCAGATG-TTTACTCAGCAGCTCATCAATGCG TACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAEST: gi|117249243|gb|CT855216.1|CT855216
genomic: CCTCAGATGTTTTACTCAGCAGCTCATCAATGCGgtatgtcttg ... ctttttccagTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATA
EST: TAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCG TACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAEST: gi|66924435|gb|CX111283.1|CX111283
genomic: TAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGgtatgtcttg ... ctttttccagTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATA
EST: TAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCG TACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAEST: gi|58687987|gb|CK076674.1|CK076674
genomic: TAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGgtatgtcttg ... ctttttccagTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATA
EST: TAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCG TACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATA
genomic: TAGGGGGATGCATGTGCCTCAGATGTTTTACTCAGCAGCTCATCAATGCGgtatgtcttg ... ctttttccagTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATA
ttgagctaacacaggttggaaatcattgacattttgatttcttttctttttccagTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTT
cattttgatttctttt CT-rich tract
attttgatttcttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaaaatgctctgatttttattggacagcttacttctttttaaattgagctaacacaggttggaaatcattgacattttgatttcttttctttttccagTACACTGTTTTATTCCGAGCTGGGACAGTGCACGCAGTTTCTCAGTCTATAGAAGCCACTCCTGTTGATTCATCTGAAAGTTCATTTGACACATATCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - -tgctctg