1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtttccatttccacattgtttcacttaattgccatagagtttctaatctcccaaaccttcttcaacagGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAA
species | Oryza sativa |
transcript | LOC_Os11g40080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATTTACCTTCTCAACTGGAATGCTTGGAAAACAGCAG GTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAEST: gi|29667118|gb|CB663393.1|CB663393
genomic: ACATTTACCTTCTCAACTGGAATGCTTGGAAAACAGCAGgtaagtttcc ... tcttcaacagGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCA
EST: GGAACGTGGTAACATTTACCTTCTCAACTGGAATGCTTGGAAAACAGCAG GTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCA
genomic: GGAACGTGGTAACATTTACCTTCTCAACTGGAATGCTTGGAAAACAGCAGgtaagtttcc ... tcttcaacagGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCA
cattgtttcacttaattgccatagagtttctaatctcccaaaccttcttcaacagGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAA
ttctaat putative branch site (score: 18)
ccttcttc putative PPT
acttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttccatttccacattgtttcacttaattgccatagagtttctaatctcccaaaccttcttcaacagGTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA