1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaccactacaattgcatgattgcggcatgcttcagatcaatacaatctatctcttatttcagccatctgtcattacttactaataacttttgtctaatttcaaacactagAAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGGAAGCAGTTGAAGATCAGATTTCCAGAGCGTGGGCAAAGCGGTAGAACTG
species | Oryza sativa |
transcript | LOC_Os11g39020.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGCATCGAGTGAGCAGAAG AAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGGEST: gi|13165094|gb|AU173891.1|AU173891
genomic: ACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGCATCGAGTGAGCAGAAGgtaaccacta ... caaacactagAAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGG
EST: ACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGCATCGAGTGAGCAGAAG AAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGGEST: gi|29682023|gb|CB678298.1|CB678298
genomic: ACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGCATCGAGTGAGCAGAAGgtaaccacta ... caaacactagAAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGG
EST: ACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGCATCGAGTGAGCAGAAG AAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGGEST: gi|29681742|gb|CB678017.1|CB678017
genomic: ACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGCATCGAGTGAGCAGAAGgtaaccacta ... caaacactagAAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGG
EST: ACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGCATCGAGTGAGCAGAAG AAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGG
genomic: ACAGACTTGGGGCTGGAGTTAACGCAGGGCGTGCATCGAGTGAGCAGAAGgtaaccacta ... caaacactagAAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGG
atttcagccatctgtcattacttactaataacttttgtctaatttcaaacactagAAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGGAAGCAGTTGAAGATCAGATTTCCAGAGCGTGGGCAAAGCGGTAGAACTG
attacttactaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccactacaattgcatgattgcggcatgcttcagatcaatacaatctatctcttatttcagccatctgtcattacttactaataacttttgtctaatttcaaacactagAAATTGGAAAAGCTTGAAAAGGAAGGATTGATTGAGAAGCCTTTCCAAAGGAAGCAGTTGAAGATCAGATTTCCAGAGCGTGGGCAAAGCGGTAGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG