1 5' 3' | 2 5' 3' |
...caccatgttttcaagtagtactagtagctacttttcagaacatgttctgtttagctgcaattgcaaaactgtctgctcaatctcaaccatgatccataagGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGGATGGAACTGGAGCTCACCGATTACCCGGGCTCCGGCGCCAACGATCGGC
species | Oryza sativa |
transcript | LOC_Os11g38790.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAG GCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGGEST: gi|88765982|gb|CI775072.1|CI775072
genomic: TGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAGgtgatccggg ... gatccataagGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGG
EST: TGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAG GCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGGEST: gi|88418450|gb|CI548731.1|CI548731
genomic: TGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAGgtgatccggg ... gatccataagGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGG
EST: TAGCAGAGGAGATGATCAG GCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGGEST: gi|88409283|gb|CI559381.1|CI559381
genomic: TAGCAGAGGAGATGATCAGgtgatccggg ... gatccataagGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGG
EST: TGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAG GCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGG
genomic: TGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAGgtgatccggg ... gatccataagGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccatgttttcaagtagtactagtagctacttttcagaacatgttctgtttagctgcaattgcaaaactgtctgctcaatctcaaccatgatccataagGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGGATGGAACTGGAGCTCACCGATTACCCGGGCTCCGGCGCCAACGATCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- -catgttt
- - - - - - - - - - - - -agctact
- - - - - - - - - - - - - - - - - - -gaacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - agctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgc