1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttctgctttattttactgtgaatgaaaatgagcatgtacttcctgccaacctttctatcattacgaactgttaggtctcacttgcttgcttgtatgcagGTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAG
species | Oryza sativa |
transcript | LOC_Os11g37130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATTGGAGTGGTTGCTCTGTTAGTCTTTGGTCCCAAAGGACTAGCAGAG GTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAEST: gi|29663432|gb|CB659707.1|CB659707
genomic: TCATTGGAGTGGTTGCTCTGTTAGTCTTTGGTCCCAAAGGACTAGCAGAGgtaaactctt ... ttgtatgcagGTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGA
EST: TCATTGGAGTGGTTGCTCTGTTAGTCTTTGGTCCCAAAGGACTAGCAGAG GTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAEST: gi|88594536|gb|CI714494.1|CI714494
genomic: TCATTGGAGTGGTTGCTCTGTTAGTCTTTGGTCCCAAAGGACTAGCAGAGgtaaactctt ... ttgtatgcagGTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGA
EST: TCATTGGAGTGGTTGCTCTGTTAGTCTTTGGTCCCAAAGGACTAGCAGAG GTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAEST: gi|88593428|gb|CI713382.1|CI713382
genomic: TCATTGGAGTGGTTGCTCTGTTAGTCTTTGGTCCCAAAGGACTAGCAGAGgtaaactctt ... ttgtatgcagGTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGA
EST: TCATTGGAGTGGTTGCTCTGTTAGTCTTTGGTCCCAAAGGACTAGCAGAG GTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGA
genomic: TCATTGGAGTGGTTGCTCTGTTAGTCTTTGGTCCCAAAGGACTAGCAGAGgtaaactctt ... ttgtatgcagGTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGA
gccaacctttctatcattacgaactgttaggtctcacttgcttgcttgtatgcagGTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAG
gtctcac putative branch site (score: 24)
cttgctt putative PPT
tatcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgctttattttactgtgaatgaaaatgagcatgtacttcctgccaacctttctatcattacgaactgttaggtctcacttgcttgcttgtatgcagGTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
-ttctgct
- - - - - - - - - gtgaatg
- - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - -tcctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgc