1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attgttttgaaagatctatttgagttgatcataatcaggctgcttgtgtgatctctctgttgttggtttttcttatgatttggttttgtatcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCTTGAAATGCTAAATACTTCGGGGAATGAACGATCTTCGAAGATTCATGA
species | Oryza sativa |
transcript | LOC_Os11g36070.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29626153|gb|CB631164.1|CB631164
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29665385|gb|CB661660.1|CB661660
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCTAATTTTCEST: gi|88721762|gb|CI745061.1|CI745061
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATGGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|88731451|gb|CI755064.1|CI755064
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29626975|gb|CB631986.1|CB631986
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29672693|gb|CB668968.1|CB668968
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|29623293|gb|CB628304.1|CB628304
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATCGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|88352092|gb|CI626092.1|CI626092
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCEST: gi|88730714|gb|CI754327.1|CI754327
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
EST: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGNAACGATGAAG GCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
genomic: CGTGAAGAGGCAGATTCTTGCGTCGTCGCTGTCCGCCGGCAACGATGAAGgtttgggggc ... tcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTC
gtgtgatctctctgttgttggtttttcttatgatttggttttgtatcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCTTGAAATGCTAAATACTTCGGGGAATGAACGATCTTCGAAGATTCATGA
tcattttt CT-rich tract
ttttgtatcattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgttttgaaagatctatttgagttgatcataatcaggctgcttgtgtgatctctctgttgttggtttttcttatgatttggttttgtatcatttttagGCAATATTGACCTGATTGCTGAAGCAAGGTCTAAAGAGATCTCGAATTTTCTTGAAATGCTAAATACTTCGGGGAATGAACGATCTTCGAAGATTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA