1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttcactcgtacatttttcaaagttcttggttcttctcatttgtgtgatacttattacatttgatctctgtgatgttaaaactgcagTCAAGGGGAAGAAACGCAAAAGTCAGCCTGGTGGGACTGAG
species | Oryza sativa |
transcript | LOC_Os11g34300.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGCAAAAACTGATAAAGAAGACACCAAGATTATTA TCAAGGGGAAGAAACGCAAAAGTCAGCCTGGTGGGACTGAGEST: gi|9865404|gb|AU101154.1|AU101154
genomic: ATGCAAAAACTGATAAAGAAGACACCAAGATTATTAgtaagttcac ... aaaactgcagTCAAGGGGAAGAAACGCAAAAGTCAGCCTGGTGGGACTGAG
EST: ATGCAAAAACTGATAAAGAAGACNCCAAGATTATTA TCAAGGGGAAGAAACGCAAAAGTCAGCCTGGTGGGACTGAGEST: gi|29665212|gb|CB661487.1|CB661487
genomic: ATGCAAAAACTGATAAAGAAGACACCAAGATTATTAgtaagttcac ... aaaactgcagTCAAGGGGAAGAAACGCAAAAGTCAGCCTGGTGGGACTGAG
EST: ATGCAAAAACTGATAAAGAAGACACCAAGATTATTA TCAAGGGGAAGAAACGCAAAAGTCAGCCTGGTGGGACTGAG
genomic: ATGCAAAAACTGATAAAGAAGACACCAAGATTATTAgtaagttcac ... aaaactgcagTCAAGGGGAAGAAACGCAAAAGTCAGCCTGGTGGGACTGAG
cttctcatttgtgtgatacttattacatttgatctctgtgatgttaaaactgcagTCAAGGGGAAGAAACGCAAAAGTCAGCCTGGTGGGACTGAG
atttgat putative branch site (score: 13)
atacttattacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcactcgtacatttttcaaagttcttggttcttctcatttgtgtgatacttattacatttgatctctgtgatgttaaaactgcagTCAAGGGGAAGAAACGCAAAAGTCAGCCTGGTGGGACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG