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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcccctaagtctctgtcgccattgtacaccatgacaagtgcttaaaaataaatcattaactttgggtgttccctttcgatatcgaggaaccaacgaatctttctcttttcttttgtagGGTTGGAATAAGAG

Basic information

species Oryza sativa
transcript LOC_Os11g34300.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88326015|gb|CI651063.1|CI651063
EST:     AAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATCTT                         GGTTGGAATAAGAG
genomic: AAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATCTTgtaagtcccc ... tcttttgtagGGTTGGAATAAGAG
EST: gi|29665211|gb|CB661486.1|CB661486
EST:     AAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATCTT                         GGTTGGAATAAGAG
genomic: AAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATCTTgtaagtcccc ... tcttttgtagGGTTGGAATAAGAG
EST: gi|58592902|gb|CF991210.1|CF991210
EST:     AAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATCTT                         GGTTGGAATAAGAG
genomic: AAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATCTTgtaagtcccc ... tcttttgtagGGTTGGAATAAGAG
EST: gi|3766577|gb|AU030687.1|AU030687
EST:     AAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATCTT                         GGTTGGAATAAGAG
genomic: AAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATCTTgtaagtcccc ... tcttttgtagGGTTGGAATAAGAG
EST: gi|117248491|gb|CT862737.1|CT862737
EST:     AAAAGTCCGAAAACAAGGAGGGTGAGTGGCGGTATCATGTCCATTATCTT                         GGTTGGAATAAGAG
genomic: AAAAGTCCGAAAACAAGGAGGATGAGTGGCGGTATCATGTCCATTATCTTgtaagtcccc ... tcttttgtagGGTTGGAATAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtgttccctttcgatatcgaggaaccaacgaatctttctcttttcttttgtagGGTTGGAATAAGAG
                                  tctttctcttttcttt  CT-rich tract
                                          ttttctttt  TA-rich tract