1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttatggatgtgatggaagtctgtttgcctcttttattgttgaaacttagtacattatagactctgcaattttgaccattcacaccattatttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAACTTGTGTTGCTACAGCGCACGAGGAATATTGACAACCTGACTGGCCAAT
species | Oryza sativa |
transcript | LOC_Os11g28340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAG GTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAAEST: gi|88849104|gb|CI087626.1|CI087626
genomic: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAGgtcagtttga ... tttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAA
EST: TCCTTATTAATGAGAGGTTTACTTTTAGAGAG GTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAAEST: gi|88367679|gb|CI568451.1|CI568451
genomic: TCCTTATTAATGAGAGGTTTACTTTTAGAGAGgtcagtttga ... tttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAA
EST: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAG GTTATGTGGGTATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAAEST: gi|58599124|gb|CK009652.1|CK009652
genomic: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAGgtcagtttga ... tttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAA
EST: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAG GTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAAEST: gi|58589776|gb|CF988084.1|CF988084
genomic: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAGgtcagtttga ... tttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAA
EST: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAG GTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAAEST: gi|33684131|gb|CF312370.1|CF312370
genomic: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAGgtcagtttga ... tttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAA
EST: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAG GTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAAEST: gi|86545642|gb|CI185848.1|CI185848
genomic: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAGgtcagtttga ... tttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAA
EST: TAATGAGAGGTTTACTTTTAGAGAG GTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAAEST: gi|88433002|gb|CI569671.1|CI569671
genomic: TAATGAGAGGTTTACTTTTAGAGAGgtcagtttga ... tttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAA
EST: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTAATTTTAGAGAG GTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTCCCTCAA
genomic: CATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTACTTTTAGAGAGgtcagtttga ... tttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAA
cttagtacattatagactctgcaattttgaccattcacaccattatttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAACTTGTGTTGCTACAGCGCACGAGGAATATTGACAACCTGACTGGCCAAT
ttttgac putative branch site (score: 3)
tacattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatggatgtgatggaagtctgtttgcctcttttattgttgaaacttagtacattatagactctgcaattttgaccattcacaccattatttggggcagGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAACTTGTGTTGCTACAGCGCACGAGGAATATTGACAACCTGACTGGCCAAT
- -atggatg
- - - - - tgatgga
- - - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcac