Sequence
atgc intronic sequence ATGC exonic sequence...cccagaggagtcaataaaggataagcaaagaagtgaaatgttatatcgaggaaataatcttttgagcttgatctattaagtgatcagtgcttatttcaagATATCAACTAAGCAGCCCGTTCAACCAGTTGACACCGAAGTCAGGGCAGAACAGAACAGTCATGCAGATGGAAAGGTCAATCAAGAGTCTGTATGTTCGG
Basic information
species | Oryza sativa |
transcript | LOC_Os11g25570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcgaggaaataatcttttgagcttgatctattaagtgatcagtgcttatttcaagATATCAACTAAGCAGCCCGTTCAACCAGTTGACACCGAAGTCAGGGCAGAACAGAACAGTCATGCAGATGGAAAGGTCAATCAAGAGTCTGTATGTTCGG
gcttgat putative branch site (score: 5)
cttatttc putative PPT
aaataatcttttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cccagaggagtcaataaaggataagcaaagaagtgaaatgttatatcgaggaaataatcttttgagcttgatctattaagtgatcagtgcttatttcaagATATCAACTAAGCAGCCCGTTCAACCAGTTGACACCGAAGTCAGGGCAGAACAGAACAGTCATGCAGATGGAAAGGTCAATCAAGAGTCTGTATGTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - -caataaa
- - - - - - - - - - - -agcaaag
- - - - - - - - - - - - - - - aagtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcttg