1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agattaattaataattattctcatatcatatctcttgagtcttgacctgttttccatgctttgtctattggccttacacatcagtttttttaactggcagCGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTCACAAAAAAATGCCCTCCACAT
species | Oryza sativa |
transcript | LOC_Os11g23790.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCACTTGATTACATGATACAGCTTGCTGAGAAGGATAGTGACAATGAG CGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTCACNEST: gi|29615880|gb|CB620892.1|CB620892
genomic: TGGCACTTGATTACATGATACAGCTTGCTGAGAAGGATAGTGACAATGAGgtactggaaa ... taactggcagCGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTCACA
EST: TGGCACTTGATTACATGATACAGCTTGCTGAGAAGGATAGTGACAATGAG CGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTCACNEST: gi|29673555|gb|CB669830.1|CB669830
genomic: TGGCACTTGATTACATGATACAGCTTGCTGAGAAGGATAGTGACAATGAGgtactggaaa ... taactggcagCGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTCACA
EST: TGGCACTTGATTACATGATACAGCTTGCTGAGAAGGATAGTGACAATGAG CGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTCACNEST: gi|33658439|gb|CF281052.1|CF281052
genomic: TGGCACTTGATTACATGATACAGCTTGCTGAGAAGGATAGTGACAATGAGgtactggaaa ... taactggcagCGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTCACA
EST: TGGCACTTGATTACATGATACAGCTTGCTGAGAAGGATAGTGACCATGAG CGTAAATCTCTCC
genomic: TGGCACTTGATTACATGATACAGCTTGCTGAGAAGGATAGTGACAATGAGgtactggaaa ... taactggcagCGTAAATCTCTCC
cctgttttccatgctttgtctattggccttacacatcagtttttttaactggcagCGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTCACAAAAAAATGCCCTCCACAT
ttttaac putative branch site (score: 29)
ttttttt CT-rich tract
atcagtttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattaattaataattattctcatatcatatctcttgagtcttgacctgttttccatgctttgtctattggccttacacatcagtttttttaactggcagCGTAAATCTCTCCTTGAGGTAGTCAAGCAGACAGTGCTGGATCATCTCACAAAAAAATGCCCTCCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA