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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaacatgctgtttttctcatgacagcagcatataaacatagatgattcatgtgattgatttcattggagctttgggctaacatgtgatattttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTGGGGCTAAATGTTTATATGCATACTCCATTCGCCTGTCAGTTCCAGAGG

Basic information

species Oryza sativa
transcript LOC_Os11g16390.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29664981|gb|CB661256.1|CB661256
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|29664982|gb|CB661257.1|CB661257
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|33381940|gb|CF197283.1|CF197283
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|29664979|gb|CB661254.1|CB661254
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|58695501|gb|CK084188.1|CK084188
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|218484548|gb|FG964491.1|FG964491
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|13420666|gb|AU174756.1|AU174756
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|29677579|gb|CB673854.1|CB673854
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|29658842|gb|CB655117.1|CB655117
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|29645119|gb|CB650126.1|CB650126
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: gi|58591459|gb|CF989767.1|CF989767
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTC
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTC
EST: gi|29664980|gb|CB661255.1|CB661255
EST:     TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG                         GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcatgtgattgatttcattggagctttgggctaacatgtgatattttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTGGGGCTAAATGTTTATATGCATACTCCATTCGCCTGTCAGTTCCAGAGG
                               ggctaac  putative branch site (score: 2)
                                            tattttttc  putative PPT
                                      atgtgatatttttt  TA-rich tract