Sequence
atgc intronic sequence ATGC exonic sequencegtaccaatctactacacagtcagtgcacatggagagctcattaattcaacattttcttgctttacttgatcttgcagAGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTGCAAGCTGTTTGTCAAGCACACTTGCTACCTTTGGCACTTGCATGGATTC
Basic information
species | Oryza sativa |
transcript | LOC_Os11g16290.5 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88386076|gb|CI570711.1|CI570711EST: TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG AGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTG
genomic: TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGgtaccaatct ... gatcttgcagAGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTG
EST:
gi|29674103|gb|CB670378.1|CB670378EST: GTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG AGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTG
genomic: GTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGgtaccaatct ... gatcttgcagAGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgcacatggagagctcattaattcaacattttcttgctttacttgatcttgcagAGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTGCAAGCTGTTTGTCAAGCACACTTGCTACCTTTGGCACTTGCATGGATTC
attaattcaacatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccaatctactacacagtcagtgcacatggagagctcattaattcaacattttcttgctttacttgatcttgcagAGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTGCAAGCTGTTTGTCAAGCACACTTGCTACCTTTGGCACTTGCATGGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA