Sequence
atgc intronic sequence ATGC exonic sequence...tgtgtgagtggcacgaggcgtggtgcggcacacctcggtgccaaggccacggcgtggatggatgcggctgtgtgatggtgatacattggtggggtggcagGAAGAGGCTAACGCGGGGAGGAATGGTTGGGATGCCAAAGTTATTGCCATGGGGCCCACTGGTGACACGCGCTACACGGTGCAAGAGCGGTCCGGCAAAT
Basic information
species | Oryza sativa |
transcript | LOC_Os11g15610.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccacggcgtggatggatgcggctgtgtgatggtgatacattggtggggtggcagGAAGAGGCTAACGCGGGGAGGAATGGTTGGGATGCCAAAGTTATTGCCATGGGGCCCACTGGTGACACGCGCTACACGGTGCAAGAGCGGTCCGGCAAAT
atacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtgtgagtggcacgaggcgtggtgcggcacacctcggtgccaaggccacggcgtggatggatgcggctgtgtgatggtgatacattggtggggtggcagGAAGAGGCTAACGCGGGGAGGAATGGTTGGGATGCCAAAGTTATTGCCATGGGGCCCACTGGTGACACGCGCTACACGGTGCAAGAGCGGTCCGGCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - tggcacg
- - - - - - - - - -gtggtgc
- - - - - - - - - - - - - ggcacac
- - - - - - - - - - - - - - - - - - - tgccaag
- - - - - - - - - - - - - - - - - - - - - - - - -cggcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgataca