1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttccatctttactactatctgttcacaatttctggaaatgtgattgtttggatgtctaacatgtggtgccgttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTTGTGTTCAACGCTGTTGGAGG
species | Oryza sativa |
transcript | LOC_Os11g14220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29640923|gb|CB645930.1|CB645930
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58672330|gb|CK061016.1|CK061016
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58665625|gb|CK054311.1|CK054311
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCCAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|569779|gb|D40628.1|D40628
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58597951|gb|CK008479.1|CK008479
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: GCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29685655|gb|CB681930.1|CB681930
genomic: GCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29681154|gb|CB677429.1|CB677429
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58657397|gb|CK046077.1|CK046077
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACGTGGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58677890|gb|CK066577.1|CK066577
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58596392|gb|CK006920.1|CK006920
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58591982|gb|CF990290.1|CF990290
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29646013|gb|CB651020.1|CB651020
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58681293|gb|CK069980.1|CK069980
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58662189|gb|CK050869.1|CK050869
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|32948138|gb|BP184710.1|BP184710
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: AACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTACCGEST: gi|58679483|gb|CK068170.1|CK068170
genomic: AACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29659209|gb|CB655484.1|CB655484
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29641878|gb|CB646885.1|CB646885
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58604790|gb|CK015318.1|CK015318
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: GGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATGGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|396941480|gb|HO188689.1|HO188689
genomic: GGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58666482|gb|CK055168.1|CK055168
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29667402|gb|CB663677.1|CB663677
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|571565|gb|D41076.1|D41076
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29626537|gb|CB631548.1|CB631548
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58597602|gb|CK008130.1|CK008130
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: GGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|300215735|gb|HO088361.1|HO088361
genomic: GGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58658785|gb|CK047465.1|CK047465
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TGGGCGAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58680050|gb|CK068737.1|CK068737
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58679814|gb|CK068501.1|CK068501
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58602793|gb|CK013321.1|CK013321
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: GGAGGATGCAGCCAACAACGTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCEST: gi|29627976|gb|CB632987.1|CB632987
genomic: GGAGGATGCAGCCAACAAC-TTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCC
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29659126|gb|CB655401.1|CB655401
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58663670|gb|CK052356.1|CK052356
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58659346|gb|CK048026.1|CK048026
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCG TGTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCEST: gi|396941103|gb|HO188312.1|HO188312
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagT-TGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCC
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29687066|gb|CB683341.1|CB683341
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58612443|gb|CK040155.1|CK040155
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|117239276|gb|CT848207.1|CT848207
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58664575|gb|CK053261.1|CK053261
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58695742|gb|CK084429.1|CK084429
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29643387|gb|CB648394.1|CB648394
genomic: CCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58684123|gb|CK072810.1|CK072810
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29615252|gb|CB620264.1|CB620264
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58661612|gb|CK050292.1|CK050292
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTAGGCCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|4880942|gb|AU065241.1|AU065241
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58663178|gb|CK051864.1|CK051864
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29646061|gb|CB651068.1|CB651068
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|300216142|gb|HO087927.1|HO087927
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|300215750|gb|HO088376.1|HO088376
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58595544|gb|CK006072.1|CK006072
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58682813|gb|CK071500.1|CK071500
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58684765|gb|CK073452.1|CK073452
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCGAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58660518|gb|CK049198.1|CK049198
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|701524|gb|D47815.1|D47815
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58604707|gb|CK015235.1|CK015235
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58682920|gb|CK071607.1|CK071607
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|300215516|gb|HO088142.1|HO088142
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|4879995|gb|AU064294.1|AU064294
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29637160|gb|CB642169.1|CB642169
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29638508|gb|CB643517.1|CB643517
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58683503|gb|CK072190.1|CK072190
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAA-GAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGA-ATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|3763809|gb|AU030561.1|AU030561
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: GGAGGATGCAGCCAACAACTTTGCCNGTGGTCACTACACNA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGNCGEST: gi|300216013|gb|HO088639.1|HO088639
genomic: GGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|701487|gb|D47778.1|D47778
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|29676943|gb|CB673218.1|CB673218
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58683584|gb|CK072271.1|CK072271
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|300215550|gb|HO088176.1|HO088176
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGEST: gi|58663452|gb|CK052138.1|CK052138
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: CAGTGGCAAGGAGGATGCAGCCAACAAC-TTGCCCGTGGTCACTACACCA TTGGCAAGGAGA-TGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
aatttctggaaatgtgattgtttggatgtctaacatgtggtgccgttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTTGTGTTCAACGCTGTTGGAGG
gtctaac putative branch site (score: 1414)
ttcgtttc putative PPT
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttccatctttactactatctgttcacaatttctggaaatgtgattgtttggatgtctaacatgtggtgccgttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTTGTGTTCAACGCTGTTGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG