Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88467437|gb|CI537079.1|CI537079EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST:
gi|88411369|gb|CI518893.1|CI518893EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST:
gi|89185091|gb|CI049637.1|CI049637EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST:
gi|9864879|gb|AU100629.1|AU100629EST: TGCTAATCATCCANGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST:
gi|88478444|gb|CI415715.1|CI415715EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST:
gi|89185434|gb|CI051762.1|CI051762EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST:
gi|3761970|gb|C99218.1|C99218EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaactgaataatggttgtctgaaactcaattcgttccccggattgttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGGCAGATTGTTTATGCAAGATGGTAGAGGTGGCAGATTATCTGTGACTAC
tgttaat putative branch site (score: 3)
attgttaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttgtttcttccatgctcttccaataattccaagttctctctagaactgaataatggttgtctgaaactcaattcgttccccggattgttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGGCAGATTGTTTATGCAAGATGGTAGAGGTGGCAGATTATCTGTGACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT