1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttggtgccactaggctttgctgttgattctatagttccaaggttgtgcccaattgatctctggtttactggttttcgcatttagGACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTAGTGTGCTGGATTTCACCCCTCAGGCTGGTGGAGGGCCTCCAGCTGTATG
species | Oryza sativa |
transcript | LOC_Os11g05260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGG GACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTAEST: gi|117243783|gb|CT843230.1|CT843230
genomic: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGGgttggtgcca ... tcgcatttagGACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTA
EST: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGG GACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAAEST: gi|58608221|gb|CK036254.1|CK036254
genomic: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGGgttggtgcca ... tcgcatttagGACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAA
EST: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGG GACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTAEST: gi|58693085|gb|CK081772.1|CK081772
genomic: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGGgttggtgcca ... tcgcatttagGACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTA
EST: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGG GACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTAEST: gi|58690888|gb|CK079575.1|CK079575
genomic: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGGgttggtgcca ... tcgcatttagGACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTA
EST: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGG GACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTA
genomic: TGTTGTTGCACATAATGCAGTGAACCAGGCTCTTGTTGCCTCTTCGTTGGgttggtgcca ... tcgcatttagGACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTA
tatagttccaaggttgtgcccaattgatctctggtttactggttttcgcatttagGACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTAGTGTGCTGGATTTCACCCCTCAGGCTGGTGGAGGGCCTCCAGCTGTATG
aattgat putative branch site (score: 10)
ttttcgc putative PPT
aattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgccactaggctttgctgttgattctatagttccaaggttgtgcccaattgatctctggtttactggttttcgcatttagGACTTGGCACAGAGTACTTTCGGATTCTACTTCAGAGCAATTGTGGTGCTAGTGTGCTGGATTTCACCCCTCAGGCTGGTGGAGGGCCTCCAGCTGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG