1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggcatgtgttatatgctgttgcagaaatgcactccttttatgtttgagggaatggtgatttgcatttgtgagtgacatgttcttatcttccccatctagGTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTTCATGAGAGAACAATTGTTTTTGGCCTGAAACTTTGGGTTGTAATTGGGA
species | Oryza sativa |
transcript | LOC_Os11g01740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCAAAG GTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTTEST: gi|29624052|gb|CB629063.1|CB629063
genomic: TCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCAAAGgttggttact ... ccccatctagGTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTT
EST: TCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCAAAG GTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTTEST: gi|88315797|gb|CI617270.1|CI617270
genomic: TCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCAAAGgttggttact ... ccccatctagGTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTT
EST: TCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCAAAG GTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTT
genomic: TCACTACCGTATTCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCAAAGgttggttact ... ccccatctagGTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTT
tgagggaatggtgatttgcatttgtgagtgacatgttcttatcttccccatctagGTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTTCATGAGAGAACAATTGTTTTTGGCCTGAAACTTTGGGTTGTAATTGGGA
ttcttatcttccccat CT-rich tract
ttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcatgtgttatatgctgttgcagaaatgcactccttttatgtttgagggaatggtgatttgcatttgtgagtgacatgttcttatcttccccatctagGTACTTGATGATCCGAAGATGTCATCAAACTCCACTCTGACAGATTCTCTTCATGAGAGAACAATTGTTTTTGGCCTGAAACTTTGGGTTGTAATTGGGA
-ggcatgt
- - - - - - - tgctgtt
- - - - - - - - - - - - - aatgcac
- - - - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatg