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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaacctaaggcagcaatttgattatgggaactttgccctattcctaaaggaatctgtgaaattgttatgttccatttaaatcatctttactgcaatatatttctttagttatgatttgtgaaacttgtgtttggaccagaatgtgtaaagtaatctttccatttttcctttagATGGGATACAGGGATGGTATAGCAGAAGGACAGAAGGACATCGCCCAAGAGGGGTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGG

Basic information

species Oryza sativa
transcript LOC_Os10g42970.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42970.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G101053_T03 (Zea mays), 3'ss of exon 3
gtataaacctaaggcagcaatttgattatgggaactttgccctattcctaaaggaatctgtgaaattgttatgttccatttaaatcatctttactgcaatatatttctttagttatgatttgtgaaacttgtgtttggaccagaatgtgtaaagtaatctttccatt---tttcctttagATGGGATACAGGGATGGTATAGCAGAAGGACAGAAGGACATCGCCCAAGAGGGGTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGG
                                                   |  |||      |    |||| |   |   | |   |   ||   |||  || | |||  |   | ||||       |  || | | |    ||||| |||| || | || |  ||   ||  || |||||||||||  | |||||| || ||||||| |||||||||   ||||| || || ||||||||||||||  ||||||||||  | |||||||| || ||||
-------------------------------------------------gtattaattatcctagagtttatctggaacgcacacagttgctagcacaaactact-cttctgcagttattt------ttactgatagaa--gaaatgtttaaaatatttttgcttttgatttcactctagATGGGATATCGTGATGGTGTAACAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaacttgtgtttggaccagaatgtgtaaagtaatctttccatttttcctttagATGGGATACAGGGATGGTATAGCAGAAGGACAGAAGGACATCGCCCAAGAGGGGTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGG
                                taatctttccattttt  CT-rich tract
                           taaagtaat  TA-rich tract