Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA

Basic information

species Oryza sativa
transcript LOC_Os10g42940.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G011518_T03 (Zea mays), 3'ss of exon 2
----------------------------------gtaggttc-actctcatccctccctccctccgcctcatcgaatct---tttattttgtt-ttgagccaa--atccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
|| || | ||| || | || | | | | | ||| | || |||| | | || | | ||| ||| | | |||| || ||| ||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| || | |||||| | |||||||||||||||||
gtccgattgtaccacctatctgcttgtgcatttcataacttttggtttcaaccattgctaattacagttgtccaactctgcacctgccatgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGGATGTTGGTGGCCAGGAGAAGCTCAGGCCCCTGTGGAGGCACTACTTCAA

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA01G43910.2 (Glycine max), 3'ss of exon 3
gtaggttcactctc-atccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
||| | | || || | | |||| | | | ||| |||| | | | | | || || | |||||| ||||| |||||||||||||| || |||||||| | ||||| || ||||||||||| || || || ||| | ||||| | |||||||||||||| |
----gttgaatgtctatatggtattggcgccgcttgttag---ttttggccagcaaatgagtctacataatgtttctctaggtttttaaatttatattgccttgcagGTTTCAATGTGGAGAAAGTTCAGTATAAGAATGTTATTTTCACAGTCTGGGATGTTGGAGGACAAGAGAAACTAAGGCCACTTTGGAGGCACTACTTTGA

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT3G03120.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
|||||| | | | | | | | | | || | ||| | || | | | | | || | | || | | |||| ||||| || ||||||||||| ||||||||||| | ||||| || ||||||||||||||||| || || |||||||||| |||||||| ||||||||
gtaggtcagatt---gctcaagcatttttattttttttgcgttttctcatttatcttacaacgggttta-------ctgaggattttaaatttc----ttacacagGTTTCAATGTTGAGAAAGTTCAGTACAAGAATGTCATCTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCCTTGTGGAGGCATTACTTCAA

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G17060.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatcat-catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
| | ||| | | | || | ||| | ||||| ||| | | | || || | | | | | | |||| ||||| || ||||||||||| |||||||||||| ||||||| || ||||||||||||||||| || ||| |||| || | |||||||| ||||||||
----ttcttgtgacattatacttttatctatgattattgt-tctgtcattttccttttggtt--gtttggattatgtctgctgacaatttaaacttatgttactcagGATTCAATGTTGAGAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTTTGGAGGCATTACTTCAA

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv16s0039g02240.t01 (Vitis vinifera), 3'ss of exon 2
gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatc-atcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
| || | | | | | | || || | | ||| | || | | | | | | ||||| || | || ||| ||||| |||||||||||||| || ||||| ||| ||||||| ||||||||||| ||||| || || ||| | ||||| | |||||||| ||||| ||
------taacagttgatcatat-tgtacatgtattatactatggatgttgatgtgtcgaatggagcttcagattgattttaattgatcattttctggtaatatatagGTTTCAATGTGGAGAAAGTTCAGTATAAGAACGTGATGTTCACAGTGTGGGATGTAGGTGGACAAGAGAAACTCAGGCCACTCTGGAGGCATTACTTTAA

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EDP05355 (Chlamydomonas reinhardtii), 3'ss of exon 1
gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatcc-----aaacccaacctaacatcatcatcatcatc--atcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
| || |||| || || ||| | | | ||||| || | ||||| | || ||| | | || | | | | | | ||||||||||||| ||||| || ||||||||||| || |||||||| |||||||| || || |||||||| || || |||| | ||| |||| ||||||||
-----------cccagta-tcccagcccatgctccat-gtaccccttattacagcccgaacagaatcccccacacacacaatccacacacacctgcgccctgcaaaccgacagGCTTCAACGTTGAGAAGGTGCAATACAAGAACGTTGTGTTCACGGTGTGGGACGTGGGCGGCCAGGAGAAGCTGCGGCCACTGTGGCGGCATTACTTCAA

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S37_304V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------------------------gtaggttcactc--tcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
|| | || | | | | | || | ||| | | | || | | || || | | | ||| | || || ||| || ||| ||| | |||| ||||| || ||||||||||||||||||||||| | ||| || |||||||| ||||| ||||| || |||||| | || | ||| |||| ||||||||
gtaatttgacttatcacttgtagtcaatccttcatttttttggtagtgcgcctcttcgtttctgagtatagatggcactgttgttttatacaatgttgcaaccgtatttcctgccaagtgcatgtga-gtgtttttgagggtaacatctgttgctaaatta-cattttc--cat--tcaattttcagGGTTCAATGTAGAGAAAGTTCAATACAAGAATGTTGAGTTTACAGTGTGGGACGTTGGAGGCCAAGAGAAATTGCGACCTCTGTGGCGGCATTACTTCAA

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S91_59V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------------------------------gtaggttcactctc-atccctccctccctccgcctcatcgaatcttttattttgttttgagccaa------atccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
|||| | | || || | | | ||| | | | | | | |||| | || | | || || | | |||| |||| || || ||||| |||||||||||||||||||| | |||||| || ||||||||||| || ||||| |||||| ||||| | ||| |||| ||||||||
gtaaagtgacacatgacacttgccgcaggtcttgatgattctcaaatggagtgtctcgtcgttcctagttgaaggtagttgtgttatctattgatgaacttttgcaccttaat-attgtgctgagcgttgatgagtcggctggttatattggcatttgttcacttcctgtgttcccgcatctctcagGATTTAATGTGGAAAAAGTTCAATACAAGAATGTCGAGTTCACAGTATGGGATGTTGGAGGTCAGGAGAAATTGCGGCCCCTTTGGCGGCATTACTTCAA

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S47_298V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------------------------------------------------gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagc-----caaatccaaacccaa----------cctaacatcatcatcatcat-catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
| || | | | | | | | | | || | ||||| ||| | ||| ||| | | | | | | | | || || || |||| ||||| |||||||||||||| |||||||| || | ||| || |||||||||||||| || || || |||||| |||| | ||| |||| || |||||
gtagcttgacttaacacttccagttgatccttttgtatttgaaagagcccctcttcgtttctgcttatttgatgtatttgcttatttgacggtgttttgtttgatgtattattctgtgtcgagtgctggtgaatttgctttcgaggatgtcatttgttaagttgttgtggttatgcaatattcagGGTTCAATGTGGAGAAAGTTCAGTACAAGAACGTCGAGTTTACAGTGTGGGATGTTGGAGGTCAAGAGAAATTGCGGCCTCTGTGGCGGCATTATTTCAA

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ08154 (Selaginella moellendorffii), 3'ss of exon 2
gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
| ||| | |||| | | | ||| ||| || || | | | | ||| || ||||||||||| || || |||||||||||||||||||| ||||||||||| ||||||||||| || | || || | |||| ||||||||| |
--------------------------------gtaatcct-ttttttctggtttcttggctttcatcttggcct--tcttgctcgactgatgtgaatccttgctagGATTTAACGTGGAGAAGGTCCAGTACAAGAATGTGGTGTTCACGGTGTGGGATGTGGGTGGCCAGGAGAAGCTAAGACCGCTCTGGAAGCACTACTTTAG

upper sequence: LOC_Os10g42940.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ24533 (Selaginella moellendorffii), 3'ss of exon 2
gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
| | | | | |||| ||| | |||| | | | | | | | | | | || ||| | ||| || ||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||| || | || || | |||| ||||||||| |
----------------------gtaatccttttttctggtttcttggctttcatcttgacc----ttcttgctcgatttctcgac-tgatgtgaatccttgc-tagGATTTAACGTGGAGAAGGTCCAGTACAAGAATGTGGTGTTCACGGTGTGGGATGTTGGTGGCCAGGAGAAGCTAAGACCGCTCTGGAAGCACTACTTTAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88764833|gb|CI773951.1|CI773951
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88430649|gb|CI596763.1|CI596763
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88738429|gb|CI761937.1|CI761937
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|29641419|gb|CB646426.1|CB646426
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88765119|gb|CI774225.1|CI774225
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|66919127|gb|CX105975.1|CX105975
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88405972|gb|CI591367.1|CI591367
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88415237|gb|CI584060.1|CI584060
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88761917|gb|CI771473.1|CI771473
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|218479927|gb|FG968408.1|FG968408
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88735828|gb|CI757403.1|CI757403
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88307304|gb|CI641942.1|CI641942
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAGTGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|33811779|gb|CF331776.1|CF331776
EST:     ACTCTATAAGCTGCACATCGGCAAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|33795688|gb|CF323714.1|CF323714
EST:     CTCTATAAGCTGCACATNCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: CTCTATAAGCTGCACAT-CGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|218479871|gb|FG966995.1|FG966995
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88743152|gb|CI766660.1|CI766660
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88574643|gb|CI666412.1|CI666412
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAGTGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
EST: gi|88426529|gb|CI579358.1|CI579358
EST:     ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAG                         GCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG
genomic: ACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcac ... catcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgagccaaatccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA
                        acctaac  putative branch site (score: 2)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaaacccaacctaacatcatcatcatcatcatcatgcagGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG