1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaataattaactactgtaactaacactactcttcttaatttataattcgttccacgtacgtacagatgatcgacatgactctgctctgctcatgaattttcttcttttaatattaataatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTGTGAGAAGGATAGTGAAGACACAGCTTATACCAGCTGAGCCCATGAAGAG
species | Oryza sativa |
transcript | LOC_Os10g42780.6 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACAT TTGGTGGNCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTEST: gi|33816892|gb|CF334280.1|CF334280
genomic: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACATgtaataatta ... aatttactagTTGGTGG-CTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGT
EST: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACAT TTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTGEST: gi|29660093|gb|CB656368.1|CB656368
genomic: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACATgtaataatta ... aatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTG
EST: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACAT TTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTG
genomic: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACATgtaataatta ... aatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTG
acatgactctgctctgctcatgaattttcttcttttaatattaataatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTGTGAGAAGGATAGTGAAGACACAGCTTATACCAGCTGAGCCCATGAAGAG
tattaat putative branch site (score: 2)
tcatgaattttcttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataattaactactgtaactaacactactcttcttaatttataattcgttccacgtacgtacagatgatcgacatgactctgctctgctcatgaattttcttcttttaatattaataatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTGTGAGAAGGATAGTGAAGACACAGCTTATACCAGCTGAGCCCATGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA