1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttgtcactccttggatgctgaatactctgattgcaatgtctgatgtgttgctggtactaacaatatattgattattctttttcagGCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTCCGCTGGCCTGCTGGGACTGATGGAGTTCTT
species | Oryza sativa |
transcript | LOC_Os10g41360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCCGTGGGTGAGGAGCACAAG GCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTCEST: gi|29627762|gb|CB632773.1|CB632773
genomic: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCCGTGGGTGAGGAGCACAAGgttgtcactc ... tctttttcagGCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTC
EST: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCCGTGGGTGAGGAGCACAAG GCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTCEST: gi|58601426|gb|CK011954.1|CK011954
genomic: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCCGTGGGTGAGGAGCACAAGgttgtcactc ... tctttttcagGCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTC
EST: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCCGTGGGTGAGGAGCACAAG GCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTCEST: gi|29635379|gb|CB640388.1|CB640388
genomic: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCCGTGGGTGAGGAGCACAAGgttgtcactc ... tctttttcagGCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTC
EST: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCCGTGGGTGAGGAGCACAAG GCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATATTC
genomic: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCCGTGGGTGAGGAGCACAAGgttgtcactc ... tctttttcagGCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTC
ttgcaatgtctgatgtgttgctggtactaacaatatattgattattctttttcagGCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTCCGCTGGCCTGCTGGGACTGATGGAGTTCTT
ttattctttttc CT-rich tract
tactaacaatatattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtcactccttggatgctgaatactctgattgcaatgtctgatgtgttgctggtactaacaatatattgattattctttttcagGCAGCCATTGCAGCAGCTGGTGGTATAAAGGCTTTGGTCGATCTCATACTCCGCTGGCCTGCTGGGACTGATGGAGTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA