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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctgtctttatcttactaaataaattattctgcgaatttttgaagaaaaatcaaacttttagtactttggaagagtagcaaactagattgctttggccacatcacatgctatcactgtcagagccataccttagcaacagcatttagcctgtatatgtatatatcatcggagtaatctatgccgaactttactcagGTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAACTTCAACCGAAATGGCCCCTCTGGCTTCTCCGGCGCCTCCACCGCCGAGG

Basic information

species Oryza sativa
transcript LOC_Os10g40030.6
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688731|gb|CK077418.1|CK077418
EST:     CAGCACCCATCGGCTTAGTACCTGTCTGCTCTGCTGTCTCAGCCTCTCAG                         GTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAAC
genomic: CAGCACCCATCGGCTTAGTACCTGTCTGCTCTGCTGTCTCAGCCTCTCAGgtcagctgtc ... ctttactcagGTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAAC
EST: gi|11025705|gb|AU162306.1|AU162306
EST:     CAGCACCCATCGGCTTAGTACCTGTCTGCTCTGCTGTCTCAGCCTCTCAG                         GTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAAC
genomic: CAGCACCCATCGGCTTAGTACCTGTCTGCTCTGCTGTCTCAGCCTCTCAGgtcagctgtc ... ctttactcagGTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAAC
EST: gi|11565212|gb|AU165848.1|AU165848
EST:     CAGCACCCATCGGCTTAGTACCTGTCTGCTCTGCTGTCTCAGCCTCTCAG                         GTTGCAAACNCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAAC
genomic: CAGCACCCATCGGCTTAGTACCTGTCTGCTCTGCTGTCTCAGCCTCTCAGgtcagctgtc ... ctttactcagGTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAAC
EST: gi|58593021|gb|CF991329.1|CF991329
EST:     CAGCACCCATCGGCTTAGTACCTGTCTGCTCTGCTGTCTCAGCCTCTCAG                         GTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAAC
genomic: CAGCACCCATCGGCTTAGTACCTGTCTGCTCTGCTGTCTCAGCCTCTCAGgtcagctgtc ... ctttactcagGTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttagcctgtatatgtatatatcatcggagtaatctatgccgaactttactcagGTTGCAAACCCCATATCCCAGAGCTCGACGCCACCCATGTGGTTTTTCAACTTCAACCGAAATGGCCCCTCTGGCTTCTCCGGCGCCTCCACCGCCGAGG
                                             ctttactc  CT-rich tract
          tatatgtatatatcat  TA-rich tract