1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taaggattgcatttattgttagtggttaacgcgtataaacaagcaaagcattggaaaacaagttaattttgatcttaaccgtgcttttgcacttgtgcagGGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACATTGCTGAAGCATTGGAATATTGTAGCAATGAGGAAAGGCCTTTATATCA
species | Oryza sativa |
transcript | LOC_Os10g39670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACT GGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACAEST: gi|29664957|gb|CB661232.1|CB661232
genomic: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACTgtgagtttcc ... acttgtgcagGGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACA
EST: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACT GGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACAEST: gi|33675246|gb|CF303485.1|CF303485
genomic: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACTgtgagtttcc ... acttgtgcagGGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACA
EST: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACT GGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACTTCAEST: gi|88335903|gb|CI645504.1|CI645504
genomic: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACTgtgagtttcc ... acttgtgcagGGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACA
EST: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACT GGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACAEST: gi|29664958|gb|CB661233.1|CB661233
genomic: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACTgtgagtttcc ... acttgtgcagGGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACA
EST: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACT GGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACA
genomic: CGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACTgtgagtttcc ... acttgtgcagGGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACA
aagcattggaaaacaagttaattttgatcttaaccgtgcttttgcacttgtgcagGGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACATTGCTGAAGCATTGGAATATTGTAGCAATGAGGAAAGGCCTTTATATCA
tcttaac putative branch site (score: 8)
aaaacaagttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaggattgcatttattgttagtggttaacgcgtataaacaagcaaagcattggaaaacaagttaattttgatcttaaccgtgcttttgcacttgtgcagGGGAAAACAAGGCTATTGAATGGGCTATGCGCCTCAGAGTTGCATACAACATTGCTGAAGCATTGGAATATTGTAGCAATGAGGAAAGGCCTTTATATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - ttgcatt
- - - - - - - - - - - - - - - - - - - -caagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa