1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgttctcaatcctcttgtttattctgtttttgataatctatatatctattgttttttcacacttaaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAG
species | Oryza sativa |
transcript | LOC_Os10g39620.6 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|58661978|gb|CK050658.1|CK050658
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|58681205|gb|CK069892.1|CK069892
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTEST: gi|58691736|gb|CK080423.1|CK080423
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCT
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|87006797|gb|CI285831.1|CI285831
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|84117240|gb|CD151007.1|CD151007
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAEST: gi|33812321|gb|CF332050.1|CF332050
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|58676841|gb|CK065528.1|CK065528
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|58597929|gb|CK008457.1|CK008457
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|58681884|gb|CK070571.1|CK070571
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|426183|gb|D22043.1|D22043
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|88388915|gb|CI592803.1|CI592803
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAAEST: gi|29618971|gb|CB623983.1|CB623983
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
EST: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATG CTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
genomic: AACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGgtatgttctc ... aaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAA
tattctgtttttgataatctatatatctattgttttttcacacttaaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAG
ttttgat putative branch site (score: 4)
tttttgataatctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctcaatcctcttgtttattctgtttttgataatctatatatctattgttttttcacacttaaattgacagCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG