1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgggtaacgagctgttttttttttttctttgcctatgttagatgttcggtctggtactcttgtcgattgatctatgacaatgcttgttgtttgtgtttgcagTGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAG
species | Oryza sativa |
transcript | LOC_Os10g39220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAACGGCG TGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGEST: gi|218494016|gb|FG950655.1|FG950655
genomic: GTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAACGGCGgtgggtaacg ... gtgtttgcagTGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAG
EST: GTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAACGGCG TGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGEST: gi|218483378|gb|FG949318.1|FG949318
genomic: GTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAACGGCGgtgggtaacg ... gtgtttgcagTGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAG
EST: GTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAACGGCG TGCGATCCATAGTGTTTCCCCTGCGACGAAATGTGCAGCTCATACATCCAG
genomic: GTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAACGGCGgtgggtaacg ... gtgtttgcagTGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAG
ggtctggtactcttgtcgattgatctatgacaatgcttgttgtttgtgtttgcagTGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAG
gattgat putative branch site (score: 32)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtaacgagctgttttttttttttctttgcctatgttagatgttcggtctggtactcttgtcgattgatctatgacaatgcttgttgtttgtgtttgcagTGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA