Sequence
atgc intronic sequence ATGC exonic sequence...tatgcttactaggcaaaagtccatatttagttgaatcacactatacaatatctgtaatttcccttcaatgtgctattctaaaatgattgttgcattgcagGTACAGTGTATCATTGGTTTGTCTTGTTTGCGGTTTGGCTTTGTGGCAGCCAGCATGTTCTTTCGCAGAAAACACCACTTGAACCAAAAGATAAATTCCT
Basic information
species | Oryza sativa |
transcript | LOC_Os10g38980.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os10g38980.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G162251_T01 (Zea mays), 3'ss of exon 1
tatgcttactaggcaaaagtccatatttagttgaatcacacta---tacaatatctgtaatttcccttcaatgtgctattctaaaatgattgttgcattgcagGTACAGTGTATCATTGGTTTGTCTTGTTTGCGGTTTGGCTTTGTGGCAGCCAGCATGTTCTTTCGCAGAAAACACCACTTGAACCAAAAGATAAATTCCT
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--tacatgttttgtttt-gtttctactgaaagtgatgtgattgaagtgcattctttgtttgctgtctttgatatgctttgctgaatataacatcacattgcagGTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCCAGCATGTTGTGTCTCAGAAATCGACACTTGAACCAAAAGATAAATTCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58667257|gb|CK055943.1|CK055943EST: TATTGGGGCTAAAAGAATGGAGAGTTCCAGCTCTGGTTCTTGTCCTCAGG GTACAGTGTATCATTGGTTTGTCTTGTTTGCGGTTTGGCTTTGTGGCAGCC
genomic: TATTGGGGCTAAAAGAATGGAGAGTTCCAGCTCTGGTTCTTGTCCTCAGGgtgagtatgt ... tgcattgcagGTACAGTGTATCATTGGTTTGTCTTGTTTGCGGTTTGGCTTTGTGGCAGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caatatctgtaatttcccttcaatgtgctattctaaaatgattgttgcattgcagGTACAGTGTATCATTGGTTTGTCTTGTTTGCGGTTTGGCTTTGTGGCAGCCAGCATGTTCTTTCGCAGAAAACACCACTTGAACCAAAAGATAAATTCCT
ttctaaa putative branch site (score: 2)
tattctaaaatgatt TA-rich tract