1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttattttgataccatttgacttgtcacttcttgacataatgccaccctactttcgttacttatgtcgtagtttttctgattatagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTATTGTGACATCAATTGGAGGTCAAAATGGGAAGCCAAAGCAG
species | Oryza sativa |
transcript | LOC_Os10g37740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCATAATGATAAG GAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTEST: gi|33681319|gb|CF309558.1|CF309558
genomic: GGCCATAATGATAAGgttattttga ... ctgattatagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATT
EST: TGAATGAGATGACAATAAGTGATGATAAAGTTGATGGCCATAATGATAAG GAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTEST: gi|58683622|gb|CK072309.1|CK072309
genomic: TGAATGAGATGACAATAAGTGATGATAAAGTTGATGGCCATAATGATAAGgttattttga ... ctgattatagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATT
EST: TGATAAAGTTGATGGCCATAATGATAAG GAATCTGAAGGTGTTATTGTTAATGCAAATGGAACGAGAAACAGGTCAGATEST: gi|58670597|gb|CK059283.1|CK059283
genomic: TGATAAAGTTGATGGCCATAATGATAAGgttattttga ... ctgattatagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAAC-AGAAACAGGTCAGAT
EST: TGAC-ATAAGTGATGATAAAGTTGATGGCCATAATGATAAG GAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATT
genomic: TGACAATAAGTGATGATAAAGTTGATGGCCATAATGATAAGgttattttga ... ctgattatagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATT
ttgacataatgccaccctactttcgttacttatgtcgtagtttttctgattatagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTATTGTGACATCAATTGGAGGTCAAAATGGGAAGCCAAAGCAG
ttctgat putative branch site (score: 18)
tttttct CT-rich tract
tttttctgattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattttgataccatttgacttgtcacttcttgacataatgccaccctactttcgttacttatgtcgtagtttttctgattatagGAATCTGAAGGTGTTATTGTTAATGCAAATGGAACAGAAACAGGTCAGATTATTGTGACATCAATTGGAGGTCAAAATGGGAAGCCAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG