1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaggggagaagatcagaagaaacatctagcttcaggtttcttgatgtcgtggcaatgtgctcatgcttttgcatcttctttgcagGTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCGTTTGCACCGAGGGACACCCATGAAGCTCAGGTGCAATTCGCGCTGGAGC
species | Oryza sativa |
transcript | LOC_Os10g36690.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCGTTGACGGACGGGAAGATCAGGACGGCGATCGACACAGGTTGCGGG GTTGCTAGCTGGGGTGCTTACEST: gi|58666287|gb|CK054973.1|CK054973
genomic: TCTCGTTGACGGACGGGAAGATCAGGACGGCGATCGACACAGGTTGCGGGgtaaggggag ... ttctttgcagGTTGCTAGCTGGGGTGCTTAC
EST: TCTCGTTGACGGACGGGAAGATCAGGACGGCGATCGACACGGGTTGCGGG GTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCGEST: gi|58671235|gb|CK059921.1|CK059921
genomic: TCTCGTTGACGGACGGGAAGATCAGGACGGCGATCGACACAGGTTGCGGGgtaaggggag ... ttctttgcagGTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCG
EST: TCTCGTTGACGGACGGGAAGATCAGGACGGCGATCGACACGGGTTGCGGG GTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCGEST: gi|58658940|gb|CK047620.1|CK047620
genomic: TCTCGTTGACGGACGGGAAGATCAGGACGGCGATCGACACAGGTTGCGGGgtaaggggag ... ttctttgcagGTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCG
EST: CGTTGACGGACGGGAAGATCAGGACGGCGATCGACACGGGTTGCGGG GTTGCTAGGGTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCEST: gi|58666828|gb|CK055514.1|CK055514
genomic: CGTTGACGGACGGGAAGATCAGGACGGCGATCGACACAGGTTGCGGGgtaaggggag ... ttctttgcagGTTGCTA-GCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTC
EST: TCTCGTTGACGGACGGGAAGATCAGGACGGCGATCGACACGGGTTGCGGG GTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCG
genomic: TCTCGTTGACGGACGGGAAGATCAGGACGGCGATCGACACAGGTTGCGGGgtaaggggag ... ttctttgcagGTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCG
ttcaggtttcttgatgtcgtggcaatgtgctcatgcttttgcatcttctttgcagGTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCGTTTGCACCGAGGGACACCCATGAAGCTCAGGTGCAATTCGCGCTGGAGC
tcttgat putative branch site (score: 4)
cttttgcatcttcttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggggagaagatcagaagaaacatctagcttcaggtttcttgatgtcgtggcaatgtgctcatgcttttgcatcttctttgcagGTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCGTTTGCACCGAGGGACACCCATGAAGCTCAGGTGCAATTCGCGCTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA